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Man Pages
TRNA2SAP(1) NCBI Tools User's Manual TRNA2SAP(1)

trna2sap - convert tRNAscan-SE output to an ASN.1 Seq-annot object

trna2sap [-] [-a] [-c str] [-f str] [-i filename] [-j] [-m str] [-n str] [-o filename] [-p dir] [-r dir] [-s] [-t str] [-u] [-x str]

trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1 Seq-annot in the format understood by other NCBI tools.

A summary of options is included below.
-
Print usage message
-a
Add tRNAscan-SE citation
-c str
Comment
-f str
Substring Filter
-i filename
Single Input file (standard input by default)
-j
Just produce a five-column feature table, à la trna2tbl(1).
-m str
ReMark
-n str
Annotation Name (normally “tRNA”).
-o filename
Single Output file (standard output by default)
-p dir
Path to files
-r dir
Path for Results
-s
Ignore Pseudo tRNAs
-t str
Annotation Title (normally “tRNAscan-SE”).
-u
Ignore Undetermined tRNAs
-x str
File selection suffix with -p (.trna by default).

The National Center for Biotechnology Information.

sequin(1), tbl2asn(1), trna2tbl(1).
2006-01-11 NCBI

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