|
Unix VPS
Support
FAQ
Network
Miscellaneous
|
| Ace::Graphics::Glyph::transcript(3) | User Contributed Perl Documentation | Ace::Graphics::Glyph::transcript(3) |
NAME
Ace::Graphics::Glyph::transcript - The "gene" glyphSYNOPSIS
See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.
DESCRIPTION
This glyph draws a series of filled rectangles connected by up-angled connectors or "hats". The rectangles indicate exons; the hats are introns. The direction of transcription is indicated by a small arrow at the end of the glyph, rightward for the + strand.The feature must respond to the exons() and optionally introns() methods, or it will default to the generic display. Implied introns (not returned by the introns() method) are drawn in a contrasting color to explicit introns.
OPTIONS
In addition to the common options, the following glyph-specific option is recognized:
Option Description Default
------ ----------- -------
-implied_intron_color The color to use for gaps gray
not returned by the introns()
method.
-draw_arrow Whether to draw arrowhead true
indicating direction of
transcription.
BUGS
Please report them.SEE ALSO
Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow, Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments, Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,AUTHOR
Lincoln Stein <lstein@cshl.org>.Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.
| 2001-05-22 | perl v5.32.1 |
Visit the GSP FreeBSD Man Page Interface.
Output converted with ManDoc.