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Man Pages
Bio::AlignIO::po(3) User Contributed Perl Documentation Bio::AlignIO::po(3)

Bio::AlignIO::po - po MSA Sequence input/output stream

Do not use this module directly. Use it via the Bio::AlignIO class.

This object can transform Bio::SimpleAlign objects to and from 'po' format flat file databases. 'po' format is the native format of the POA alignment program (Lee C, Grasso C, Sharlow MF, 'Multiple sequence alignment using partial order graphs', Bioinformatics (2002), 18(3):452-64).

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

  https://github.com/bioperl/bioperl-live/issues

Email: matthew.betts@ii.uib.no

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

 Title   : next_aln
 Usage   : $aln = $stream->next_aln()
 Function: returns the next alignment in the stream.
 Returns : L<Bio::Align::AlignI> object - returns undef on end of file
            or on error
 Args    : NONE

 Title   : write_aln
 Usage   : $stream->write_aln(@aln)
 Function: writes the $aln object into the stream in po format
 Returns : 1 for success and 0 for error
 Args    : L<Bio::Align::AlignI> object
2019-12-07 perl v5.32.1

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