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Bio::TreeIO::nhx(3) User Contributed Perl Documentation Bio::TreeIO::nhx(3)

Bio::TreeIO::nhx - TreeIO implementation for parsing Newick/New Hampshire eXtendend (NHX) format.

  # do not use this module directly
  use Bio::TreeIO;
  my $treeio = Bio::TreeIO->new(-format => 'nhx', -file => 'tree.dnd');
  my $tree = $treeio->next_tree;

This module handles parsing and writing of Newick/New Hampshire eXtended (NHX) format.

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted viax the web:

  https://github.com/bioperl/bioperl-live/issues

Email amackey-at-virginia.edu

Email jason-at-bioperl-dot-org

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
2019-12-07 perl v5.32.1

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