NAME

asn2ff - convert ASN.1 biological data to a flat format (old version)

SYNOPSIS

asn2ff [-] [-A X] [-B X] [-C] [-G] [-L F] [-M] [-R] [-V F] [-a filename] [-b] [-d] [-e] [-f b/p/e/s/x/z] [-g] [-h F] [-k F] [-l filename] [-m r/d/s/c/k/l/e/p] [-n F] [-o filename] [-p F] [-q] [-r filename] [-s] [-t] [-v F] [-w] [-y] [-z]

DESCRIPTION

asn2ff converts descriptions of biological sequences from NCBI's ASN.1 format to one of several flat-file formats. This program is built around a deprecated interface; please use asn2gb(1) instead.

OPTIONS

A summary of options is included below.

-: Print usage message
-A X: Show region starting at X (default is 0)
-B X: Show region ending at X (default is last position)
-C: Show Bankit comments
-G: Output is one top bioseq only in genome view
-L F: Use old (pre-Genbank 127.0) LOCUS line format
-M: Output is map bioseqs only
-R: For GenBank Release
-V F: Don't use VERSION
-a filename: Filename for ASN.1 input (default is stdin)
-b: Input asnfile in binary mode
-d: Use SeqMgr indexing
-e: Input is a Seq-entry
-f b/p/e/s/x/z: Output Format:

b: GenBank (default)
p: GenPept
e: EMBL
s: PseudoEMBL
x: GenBankSelect
z: EMBLPEPT

-g: Show gi numbers
-h F: Hide sequence
-k F: Don't use complex sets (phy-set,mut-set, pop-set)
-l filename: Log errors to filename
-m r/d/s/c/k/l/e/p: Output mode:

r: release (default)
d: dump
s: Sequin
c: Chromoscope
k: dir-sub-debug
l: dir-sub
e: revise
p: partial report

-n F: Strict gene_binding
-o filename: Output Filename (default is stdout)
-p F: Omit new gene features
-q: Output is one top bioseq only
-r filename: Output error logfile (default is stderr)
-s: Input is a Seq-submit
-t: Show verbose message text
-v F: Suppress error messages
-w: Use HTML output format
-y: Print help format only
-z: New algorithm for orgnames

AUTHOR

The National Center for Biotechnology Information.

NAME

SYNOPSIS

DESCRIPTION

OPTIONS

AUTHOR

SEE ALSO