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| NPS2GPS(1) | FreeBSD General Commands Manual | NPS2GPS(1) |
NAME
nps2gps - convert nucleotide-protein sets to ASN.1 genomic product setsSYNOPSIS
nps2gps [-] [-B] [-D] [-F] [-G str] [-L] [-N] [-P] [-Q] [-R] [-S] [-T] [-U] [-f str] [-i filename] [-o filename] [-p path] [-r path] [-x str]DESCRIPTION
nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it outputs as text ASN.1.OPTIONS
A summary of options is included below.- -
- Print usage message
- -B
- NG and NR rRNA
- -D
- RefSeq mRNA Titles
- -F
- Map by Feature ID
- -G str
- General ID database name
- -L
- Lock components in advance
- -N
- Promote Non-coding RNAs
- -P
- mRNA ID from Protein
- -Q
- Special mRNA titles
- -R
- Enable Remote fetching from ID
- -S
- Special ncRNA on preRNA
- -T
- Map by Transcript ID
- -U
- Remove Unnecessary gene cross-references
- -f str
- Substring filter
- -i filename
- Single input file (default = stdin)
- -o filename
- Single output file (default = stdout)
- -p path
- Path to files for batch conversion
- -r path
- Path for results of batch conversion
- -x str
- File selection suffix for batch conversion (default = .ent)
AUTHOR
The National Center for Biotechnology Information.SEE ALSO
asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1).| 2016-09-01 | NCBI Tools User's Manual |
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