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| TRNA2SAP(1) | NCBI Tools User's Manual | TRNA2SAP(1) |
NAME
trna2sap - convert tRNAscan-SE output to an ASN.1 Seq-annot objectSYNOPSIS
trna2sap [-] [-a] [-c str] [-f str] [-i filename] [-j] [-m str] [-n str] [-o filename] [-p dir] [-r dir] [-s] [-t str] [-u] [-x str]DESCRIPTION
trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1 Seq-annot in the format understood by other NCBI tools.OPTIONS
A summary of options is included below.- -
- Print usage message
- -a
- Add tRNAscan-SE citation
- -c str
- Comment
- -f str
- Substring Filter
- -i filename
- Single Input file (standard input by default)
- -j
- Just produce a five-column feature table, à la trna2tbl(1).
- -m str
- ReMark
- -n str
- Annotation Name (normally “tRNA”).
- -o filename
- Single Output file (standard output by default)
- -p dir
- Path to files
- -r dir
- Path for Results
- -s
- Ignore Pseudo tRNAs
- -t str
- Annotation Title (normally “tRNAscan-SE”).
- -u
- Ignore Undetermined tRNAs
- -x str
- File selection suffix with -p (.trna by default).
AUTHOR
The National Center for Biotechnology Information.SEE ALSO
sequin(1), tbl2asn(1), trna2tbl(1).| 2006-01-11 | NCBI |
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