NAME

vcfannotate

SYNOPSIS

vcfannotate options []

DESCRIPTION

Intersect the records in the VCF file with targets provided in a BED file. Intersections are done on the reference sequences in the VCF file. If no VCF filename is specified on the command line (last argument) the VCF read from stdin.

OPTIONS


options:
    -b, --bed   use annotations provided by this BED file
    -k, --key   use this INFO field key for the annotations
    -d, --default  use this INFO field key for records without annotations
Type: transformation

EXIT VALUES

0: Success
not 0: Failure

OTHER

LICENSE

AUTHORS

Erik Garrison and vcflib contributors.