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VCFSITESUMMARIZE(1) vcfsitesummarize (VCF statistics) VCFSITESUMMARIZE(1)

vcfsitesummarize

vcfsitesummarize

Summarize by site


Example:
**vcfsitesummarize** samples/sample.vcf
CHROM   POS     ID      REF     QUAL    FILTER  AA      AC      AF      AN      DP      NS      DB      H2
19      111     .       A       9.6     .                                                       0       0
19      112     .       A       10      .                                                       0       0
20      14370   rs6054257       G       29      PASS                    0.5             14      3       1 1
20      17330   .       T       3       q10                     0.017           11      3       0       0
20      1110696 rs6040355       A       67      PASS    T                               10      2       1 0
20      1230237 .       T       47      PASS    T                               13      3       0       0
20      1234567 microsat1       G       50      PASS    G                       6       9       3       0 0
20      1235237 .       T       0       .                                                       0       0
X       10      rsTest  AC      10      PASS
Type: statistics
      

    

0
Success
not 0
Failure

vcflib(1)

Copyright 2011-2022 (C) Erik Garrison and vcflib contributors. MIT licensed.

Erik Garrison and vcflib contributors.
vcfsitesummarize (vcflib)

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