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| blt(1) | FreeBSD General Commands Manual | blt(1) |
NAME
blt - Wrapper for all biolibc-tools subcommandsSYNOPSIS
blt blt subcommand arguments
DESCRIPTION
blt is a wrapper for biolibc-tools subcommands, which are installed in a private directory in order to avoid conflicts with other programs bearing the same name.Running blt with no arguments lists available subcommands. For each subcommands there is a man page under the name blt-<subcommand>.
awk -F '\t' '{ printf("%s\n%s\n", $1, $2); }' \
file.tsv > file.fasta
awk -F '\t' '{ printf("%s\n%s\n%s\n%s\n", $1, $2, $3, $4); }' \
file.tsv > file.fastq
EXAMPLES
blt version blt chrom-lens < file.fasta blt extract-seq file.gff3 file.fasta feature-type 'search-key' blt fasta2seq < file.fasta > file.seq blt fastx-derep < file.fastq > filtered-file.fastq blt fastx-derep < file.fasta > filtered-file.fasta blt fastx-stats file1.fastq file2.fasta.xz blt fastx2tsv < file.fastq > file.tsv blt fastx2tsv < file.fasta > file.tsv blt fasta2seq < file.fasta | blt find-orfs 0 blt gff2bed < file.gff > file.bed blt vcf-search chr1 23244 < file.vcf blt ensemblid2gene file.gff3 ids.txt > ids-and-gene-names.tsv
SEE ALSO
blt-chrom-lens(1), blt-extract-seq(1), blt-fasta2seq(1), blt-fastx-derep(1), blt-fastx-stats(1), blt-fastx2tsv(1), blt-fasta2seq(1), blt-find-orfs(1), blt-gff2bed(1), blt-vcf-search(1), blt-ensemblid2geneAUTHOR
J. Bacon
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