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| fastq-scum(1) | FreeBSD General Commands Manual | fastq-scum(1) |
SYNOPSIS
fastq-scum file.fastq[.xz|.bz2|.gz]
ARGUMENTS
file FASTQ file, optinally compressed with xz, bzip2, or gzip
DESCRIPTION
fastq-scum scans a FASTQ file for known adapters and poly-A tails of length 8 or more, showing matching sequences with the adapters or tails in color. This helps the user determine optimal parameters for use with fastq-trim.RETURN VALUES
0 on success, non-zero error code otherwiseEXAMPLES
fastq-scum file.fastq.xz
SEE ALSO
fastq-trim
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