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| Bio::Phylo::Unparsers::Cdao(3) | User Contributed Perl Documentation | Bio::Phylo::Unparsers::Cdao(3) |
NAME
Bio::Phylo::Unparsers::Cdao - Serializer used by Bio::Phylo::IO, no serviceable parts insideDESCRIPTION
This module generates an RDF representation of a Bio::Phylo::Project object, using terms from the CDAO ontology: <http://www.evolutionaryontology.org/cdao>.The module depends on the xsltproc utility being present in the PATH of your system: <http://xmlsoft.org/XSLT/xsltproc2.html>. If your xsltproc is in a different location, you can optionally specify it with the -xsltproc => (path) argument to the unparse() call.
Unless an additional -xslt => (file|url) argument is passed to the unparse() call, xsltproc will try to download the stylesheet that transforms NeXML to RDF from this location: <http://nexml.org/nexml/xslt/nexml2cdao.xsl>. This means that, if you don't give the -xslt argument, your computer must be connected to the internet.
SEE ALSO
There is a mailing list at <https://groups.google.com/forum/#!forum/bio-phylo> for any user or developer questions and discussions.- Bio::Phylo::IO
- The cdao unparser is called by the Bio::Phylo::IO object. Look there to learn how to create phylip formatted files.
- Bio::Phylo::Manual
- Also see the manual: Bio::Phylo::Manual and <http://rutgervos.blogspot.com>.
CITATION
If you use Bio::Phylo in published research, please cite it:Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. <http://dx.doi.org/10.1186/1471-2105-12-63>
| 2017-10-30 | perl v5.32.1 |
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