|
Unix VPS
Support
FAQ
Network
Miscellaneous
|
| Bio::Phylo::Unparsers::Fasta(3) | User Contributed Perl Documentation | Bio::Phylo::Unparsers::Fasta(3) |
NAME
Bio::Phylo::Unparsers::Fasta - Serializer used by Bio::Phylo::IO, no serviceable parts insideDESCRIPTION
Definition lines for each FASTA records are either (first choice) created from the generic 'fasta_def_line' annotation which can be manipulated like so:$datum->set_generic( 'fasta_def_line' => $line )
So you can retrieve it by calling:
my $line = $datum->get_generic('fasta_def_line');
Alternatively the name of the $datum is used, or, lacking that, the name of the associated taxon, if any.
SEE ALSO
There is a mailing list at <https://groups.google.com/forum/#!forum/bio-phylo> for any user or developer questions and discussions.- Bio::Phylo::IO
- The fasta unparser is called by the Bio::Phylo::IO object. Look there to learn how to create phylip formatted files.
- Bio::Phylo::Manual
- Also see the manual: Bio::Phylo::Manual and <http://rutgervos.blogspot.com>.
CITATION
If you use Bio::Phylo in published research, please cite it:Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. <http://dx.doi.org/10.1186/1471-2105-12-63>
| 2017-10-30 | perl v5.32.1 |
Visit the GSP FreeBSD Man Page Interface.
Output converted with ManDoc.