NAME

Bio::Tools::Profile - parse Profile output

SYNOPSIS

 use Bio::Tools::Profile;
 my $profile_parser = Bio::Tools::Profile->new(-fh =>$filehandle );
 while( my $profile_feat = $profile_parser->next_result ) {
       push @profile_feat, $profile_feat;
}

DESCRIPTION

 Parser for Profile output

FEEDBACK

Mailing Lists

 User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://github.com/bioperl/bioperl-live/issues

AUTHOR - Balamurugan Kumarasamy

 Email: fugui@worf.fugu-sg.org

APPENDIX

 The rest of the documentation details each of the object methods.
 Internal methods are usually preceded with a _

new

 Title   : new
 Usage   : my $obj = Bio::Tools::Profile->new();
 Function: Builds a new Bio::Tools::Profile object
 Returns : Bio::Tools::Profile
 Args    : -filename
           -fh ($filehandle)

next_result

 Title   : next_result
 Usage   : my $feat = $profile_parser->next_result
 Function: Get the next result set from parser data
 Returns : L<Bio::SeqFeature::FeaturePair>
 Args    : none

create_feature

 Title   : create_feature
 Usage   : my $feat= $profile_parser->create_feature($feature)
 Function: creates a Bio::SeqFeature::FeaturePair object
 Returns : L<Bio::SeqFeature::FeaturePair>
 Args    :