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| bl_fastq_3p_trim(3) | FreeBSD Library Functions Manual | bl_fastq_3p_trim(3) |
LIBRARY
#include <biolibc/fastq.h> -lbiolibc -lxtend
SYNOPSIS
size_t bl_fastq_3p_trim(bl_fastq_t *read, size_t new_len)ARGUMENTS
read FASTQ read to be trimmed new_len New length and location of the null terminators
DESCRIPTION
Trim the 3' end of a FASTQ sequence and qualit string at location new_len.RETURN VALUES
BL_DATA_OK if new_len is between 0 and original length, BL_DATA_INVALID otherwise.EXAMPLES
bl_fastq_t read;
char *adapter;
size_t index;
index = bl_fastq_find_adapter_smart(&read, adapter, 3, 10);
if ( BL_FASTQ_SEQ_AE(&read, index) != '0' )
bl_fastq_3p_trim(&read, index);
SEE ALSO
bl_fastq_find_adapter_smart(3), bl_fastq_find_adapter_exact(3)
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