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| bl_sam_buff_init(3) | FreeBSD Library Functions Manual | bl_sam_buff_init(3) |
LIBRARY
#include <biolibc/sam-buff.h> -lbiolibc -lxtend
SYNOPSIS
void bl_sam_buff_init(bl_sam_buff_t *sam_buff, unsigned int mapq_min, size_t max_alignments)ARGUMENTS
sam_buff Pointer to a the bl_sam_buff_t structure to initialize mapq_min User-selected minimum MAPQ value
DESCRIPTION
Initialize a SAM alignment buffer for holding recently read SAM alignments. This is useful, for example, when scanning a SAM stream for alignments overlapping a certain region or position. The buffer array is set to a reasonable initial size and extended as far as BL_SAM_BUFF_MAX_SIZE by bl_sam_buff_add_alignment(3) if needed. A minimum MAPQ value is stored in the bl_sam_buff_t structure for filtering with bl_sam_buff_alignment_ok(3).SEE ALSO
bl_sam_buff_check_order(3), bl_sam_read(3)
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