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Man Pages
bl_vcf_call_in_alignment(3) FreeBSD Library Functions Manual bl_vcf_call_in_alignment(3) 

#include <biolibc/vcf.h>
-lbiolibc -lxtend

bool bl_vcf_call_in_alignment(bl_vcf_t *vcf_call, bl_sam_t *sam_alignment) 

vcf_call    Pointer to bl_vcf_t structure containing VCF call
sam_alignment   Pointer to bl_sam_t structure containing alignment

Determine if a VCF call is within a SAM alignment, i.e. on the same chrom and between the start and end positions of the alignment.

true if the call is within the alignment false otherwise

bl_vcf_call_downstream_of_alignment(3)

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